SNP Detail For rs7153703
1.Mapping Information
Human SNP ID rs7153703
Human chromosome chr14
Human SNP position 51453104
Pig chromosome chr1
Pig SNP position 201424978
2.Annotation Information
PubMed ID21116278
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21116278
StudyGenome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease.
Disease/TraitTotal ventricular volume
Initial sample424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls
Replication sampleNA
Region14q22.1
Chromosome idchr14
Chromosome position51453104
Reported geneFRMD6
Mapped geneSETP2 - FRMD6-AS2
Upstream gene id326277
Downstream gene id100874185
SNP gene ids
Upstream gene distance13791
Downstream gene distance1408
SNP risk allelers7153703-?
SNPsrs7153703
Merged0
SNP id current7153703
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.006
%95 Ci[NR] unit increase
PlatformIllumina [478011]
CNVN
Mapped traitbrain volume measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006930
Study accessionGCST000898