Human SNP ID | rs7153703 |
---|---|
Human chromosome | chr14 |
Human SNP position | 51453104 |
Pig chromosome | chr1 |
Pig SNP position | 201424978 |
PubMed ID | 21116278 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21116278 |
Study | Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer__s disease. |
Disease/Trait | Total ventricular volume |
Initial sample | 424 European ancestry mild cognitive impairment cases, 236 European ancestry Alzheimer__s disease cases, 279 European ancestry controls |
Replication sample | NA |
Region | 14q22.1 |
Chromosome id | chr14 |
Chromosome position | 51453104 |
Reported gene | FRMD6 |
Mapped gene | SETP2 - FRMD6-AS2 |
Upstream gene id | 326277 |
Downstream gene id | 100874185 |
SNP gene ids | |
Upstream gene distance | 13791 |
Downstream gene distance | 1408 |
SNP risk allele | rs7153703-? |
SNPs | rs7153703 |
Merged | 0 |
SNP id current | 7153703 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.006 |
%95 Ci | [NR] unit increase |
Platform | Illumina [478011] |
CNV | N |
Mapped trait | brain volume measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006930 |
Study accession | GCST000898 |