SNP Detail For rs7152530
1.Mapping Information
Human SNP ID rs7152530
Human chromosome chr14
Human SNP position 98174878
Pig chromosome chr7
Pig SNP position 126565545
2.Annotation Information
PubMed ID24847357
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24847357
StudyGenome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections.
Disease/TraitStaphylococcus aureus infection
Initial sample309 European ancestry cases, 2,925 European ancestry controls
Replication sampleNA
Region14q32.2
Chromosome idchr14
Chromosome position98174878
Reported geneVRK1, BCL11B
Mapped geneLOC105370655 - LOC105370656
Upstream gene id105370655
Downstream gene id105370656
SNP gene ids
Upstream gene distance6879
Downstream gene distance39127
SNP risk allelers7152530-G
SNPsrs7152530
Merged0
SNP id current7152530
Contextintron_variant
Intergenic1
Allele frequency0.633254
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.61
%95 Ci[1.33-1.96]
PlatformIllumina [508921]
CNVN
Mapped traitStaphylococcus aureus infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005681
Study accessionGCST002440