Human SNP ID | rs7152530 |
---|---|
Human chromosome | chr14 |
Human SNP position | 98174878 |
Pig chromosome | chr7 |
Pig SNP position | 126565545 |
PubMed ID | 24847357 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24847357 |
Study | Genome wide association study of SNP-, gene-, and pathway-based approaches to identify genes influencing susceptibility to Staphylococcus aureus infections. |
Disease/Trait | Staphylococcus aureus infection |
Initial sample | 309 European ancestry cases, 2,925 European ancestry controls |
Replication sample | NA |
Region | 14q32.2 |
Chromosome id | chr14 |
Chromosome position | 98174878 |
Reported gene | VRK1, BCL11B |
Mapped gene | LOC105370655 - LOC105370656 |
Upstream gene id | 105370655 |
Downstream gene id | 105370656 |
SNP gene ids | |
Upstream gene distance | 6879 |
Downstream gene distance | 39127 |
SNP risk allele | rs7152530-G |
SNPs | rs7152530 |
Merged | 0 |
SNP id current | 7152530 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.633254 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.61 |
%95 Ci | [1.33-1.96] |
Platform | Illumina [508921] |
CNV | N |
Mapped trait | Staphylococcus aureus infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005681 |
Study accession | GCST002440 |