Human SNP ID | rs7149859 |
---|---|
Human chromosome | chr14 |
Human SNP position | 67599772 |
Pig chromosome | chr7 |
Pig SNP position | 97622087 |
PubMed ID | 25890600 |
---|---|
Journal | J Natl Cancer Inst |
Link | www.ncbi.nlm.nih.gov/pubmed/25890600 |
Study | Identification of novel genetic markers of breast cancer survival. |
Disease/Trait | Breast cancer (survival) |
Initial sample | 23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases |
Replication sample | |
Region | 14q24.1 |
Chromosome id | chr14 |
Chromosome position | 67599772 |
Reported gene | NR |
Mapped gene | PIGH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5283 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7149859-? |
SNPs | rs7149859 |
Merged | 0 |
SNP id current | 7149859 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (ER +ve) |
Or beta | 1.22 |
%95 Ci | [1.13-1.33] |
Platform | Affymetrix, Illumina [9000000] (imputed) |
CNV | N |
Mapped trait | survival time, estrogen-receptor positive breast cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000714, http://www.ebi.ac.uk/efo/EFO_1000649 |
Study accession | GCST002861 |