SNP Detail For rs7149859
1.Mapping Information
Human SNP ID rs7149859
Human chromosome chr14
Human SNP position 67599772
Pig chromosome chr7
Pig SNP position 97622087
2.Annotation Information
PubMed ID25890600
JournalJ Natl Cancer Inst
Linkwww.ncbi.nlm.nih.gov/pubmed/25890600
StudyIdentification of novel genetic markers of breast cancer survival.
Disease/TraitBreast cancer (survival)
Initial sample23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases
Replication sample
Region14q24.1
Chromosome idchr14
Chromosome position67599772
Reported geneNR
Mapped genePIGH
Upstream gene id
Downstream gene id
SNP gene ids5283
Upstream gene distance
Downstream gene distance
SNP risk allelers7149859-?
SNPsrs7149859
Merged0
SNP id current7149859
Contextintron_variant
Intergenic0
Allele frequency
P value0.0000007
Pvalue mlog6.15490195998574
P value text(ER +ve)
Or beta1.22
%95 Ci[1.13-1.33]
PlatformAffymetrix, Illumina [9000000] (imputed)
CNVN
Mapped traitsurvival time, estrogen-receptor positive breast cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000714, http://www.ebi.ac.uk/efo/EFO_1000649
Study accessionGCST002861