SNP Detail For rs71485777
1.Mapping Information
Human SNP ID rs71485777
Human chromosome chr10
Human SNP position 99523571
Pig chromosome chr14
Pig SNP position 120156934
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q24.2
Chromosome idchr10
Chromosome position99523571
Reported geneNR
Mapped geneLOC101927300 - LINC01475
Upstream gene id101927300
Downstream gene id101927324
SNP gene ids
Upstream gene distance62355
Downstream gene distance2779
SNP risk allelers71485777-?
SNPsrs71485777
Merged
SNP id current71485777
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value1E-36
Pvalue mlog36
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044