Human SNP ID | rs7141529 |
---|---|
Human chromosome | chr14 |
Human SNP position | 68660027 |
Pig chromosome | chr7 |
Pig SNP position | 98666319 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 14q24.1 |
Chromosome id | chr14 |
Chromosome position | 68660027 |
Reported gene | RAD51B, ZFP36L1, ACTN1 |
Mapped gene | LOC105370544, LOC100996664, RAD51B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105370544, 100996664, 5890 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7141529-G |
SNPs | rs7141529 |
Merged | 0 |
SNP id current | 7141529 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.06-1.12] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |