Human SNP ID | rs71413769 |
---|---|
Human chromosome | chr2 |
Human SNP position | 139075570 |
Pig chromosome | chr15 |
Pig SNP position | 14562762 |
PubMed ID | 26420894 |
---|---|
Journal | Nephrol Dial Transplant |
Link | www.ncbi.nlm.nih.gov/pubmed/26420894 |
Study | Genetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium. |
Disease/Trait | Glomerular filtration rate in chronic kidney disease |
Initial sample | up to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases |
Replication sample | NA |
Region | 2q22.1 |
Chromosome id | chr2 |
Chromosome position | 139075570 |
Reported gene | NXPH2 |
Mapped gene | LOC105373640 - LOC105373642 |
Upstream gene id | 105373640 |
Downstream gene id | 105373642 |
SNP gene ids | |
Upstream gene distance | 100290 |
Downstream gene distance | 159116 |
SNP risk allele | rs71413769-G |
SNPs | rs71413769 |
Merged | |
SNP id current | 71413769 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.071-0.149] unit increase |
Platform | Illumina [~ 8300000] (imputed) |
CNV | N |
Mapped trait | glomerular filtration rate, chronic kidney disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884 |
Study accession | GCST003139 |