SNP Detail For rs71413769
1.Mapping Information
Human SNP ID rs71413769
Human chromosome chr2
Human SNP position 139075570
Pig chromosome chr15
Pig SNP position 14562762
2.Annotation Information
PubMed ID26420894
JournalNephrol Dial Transplant
Linkwww.ncbi.nlm.nih.gov/pubmed/26420894
StudyGenetic loci associated with renal function measures and chronic kidney disease in children: the Pediatric Investigation for Genetic Factors Linked with Renal Progression Consortium.
Disease/TraitGlomerular filtration rate in chronic kidney disease
Initial sampleup to 744 Central European ancestry child cases, up to 397 Turkish ancestry child cases
Replication sampleNA
Region2q22.1
Chromosome idchr2
Chromosome position139075570
Reported geneNXPH2
Mapped geneLOC105373640 - LOC105373642
Upstream gene id105373640
Downstream gene id105373642
SNP gene ids
Upstream gene distance100290
Downstream gene distance159116
SNP risk allelers71413769-G
SNPsrs71413769
Merged
SNP id current71413769
Contextintergenic_variant
Intergenic1
Allele frequency0.1
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.11
%95 Ci[0.071-0.149] unit increase
PlatformIllumina [~ 8300000] (imputed)
CNVN
Mapped traitglomerular filtration rate, chronic kidney disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005208, http://www.ebi.ac.uk/efo/EFO_0003884
Study accessionGCST003139