SNP Detail For rs71277158
1.Mapping Information
Human SNP ID rs71277158
Human chromosome chr3
Human SNP position 170281428
Pig chromosome chr13
Pig SNP position 117719847
2.Annotation Information
PubMed ID25939597
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25939597
StudyTwo susceptibility loci identified for prostate cancer aggressiveness.
Disease/TraitProstate cancer
Initial sample4,600 European ancestry cases, 2,941 European ancestry controls
Replication sample7,779 European ancestry cases, 7,623 European ancestry controls
Region3q26.2
Chromosome idchr3
Chromosome position170281428
Reported genePRKCI
Mapped genePRKCI
Upstream gene id
Downstream gene id
SNP gene ids5584
Upstream gene distance
Downstream gene distance
SNP risk allelers71277158-T
SNPsrs71277158
Merged0
SNP id current71277158
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.82
P value0.00000000000008
Pvalue mlog13.096910013008
P value text
Or beta1.22
%95 Ci[1.15-1.28]
PlatformIllumina [1531807] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002890