Human SNP ID | rs71277158 |
---|---|
Human chromosome | chr3 |
Human SNP position | 170281428 |
Pig chromosome | chr13 |
Pig SNP position | 117719847 |
PubMed ID | 25939597 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25939597 |
Study | Two susceptibility loci identified for prostate cancer aggressiveness. |
Disease/Trait | Prostate cancer |
Initial sample | 4,600 European ancestry cases, 2,941 European ancestry controls |
Replication sample | 7,779 European ancestry cases, 7,623 European ancestry controls |
Region | 3q26.2 |
Chromosome id | chr3 |
Chromosome position | 170281428 |
Reported gene | PRKCI |
Mapped gene | PRKCI |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5584 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs71277158-T |
SNPs | rs71277158 |
Merged | 0 |
SNP id current | 71277158 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.82 |
P value | 0.00000000000008 |
Pvalue mlog | 13.096910013008 |
P value text | |
Or beta | 1.22 |
%95 Ci | [1.15-1.28] |
Platform | Illumina [1531807] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002890 |