SNP Detail For rs7122539
1.Mapping Information
Human SNP ID rs7122539
Human chromosome chr11
Human SNP position 66895260
Pig chromosome chr2
Pig SNP position 4600078
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 susceptibility
Initial sample496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples
Replication sampleNA
Region11q13.2
Chromosome idchr11
Chromosome position66895260
Reported genePC
Mapped genePC
Upstream gene id
Downstream gene id
SNP gene ids5091
Upstream gene distance
Downstream gene distance
SNP risk allelers7122539-?
SNPsrs7122539
Merged0
SNP id current7122539
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV-1 infection, Susceptibility to viral and mycobacterial infections
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311
Study accessionGCST001353