Human SNP ID | rs7116456 |
---|---|
Human chromosome | chr11 |
Human SNP position | 23933767 |
Pig chromosome | chr2 |
Pig SNP position | 38706528 |
PubMed ID | 24376456 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24376456 |
Study | Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. |
Disease/Trait | Systolic blood pressure (alcohol consumption interaction) |
Initial sample | up to 6,882 European ancestry individuals |
Replication sample | NA |
Region | 11p14.3 |
Chromosome id | chr11 |
Chromosome position | 23933767 |
Reported gene | intergenic |
Mapped gene | LOC105376593 - LOC105376594 |
Upstream gene id | 105376593 |
Downstream gene id | 105376594 |
SNP gene ids | |
Upstream gene distance | 183849 |
Downstream gene distance | 325618 |
SNP risk allele | rs7116456-T |
SNPs | rs7116456 |
Merged | 0 |
SNP id current | 7116456 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.003 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (drinks/week) |
Or beta | 0.929 |
%95 Ci | [0.6-1.26] unit increase |
Platform | Affymetrix [2500000] (imputed) |
CNV | N |
Mapped trait | systolic blood pressure, alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST002307 |