Human SNP ID | rs710841 |
---|---|
Human chromosome | chr4 |
Human SNP position | 81228677 |
Pig chromosome | chr8 |
Pig SNP position | 146038827 |
PubMed ID | 19343178 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19343178 |
Study | Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. |
Disease/Trait | Height |
Initial sample | 12,611 European ancestry individuals |
Replication sample | 7,187 European ancestry individuals |
Region | 4q21.21 |
Chromosome id | chr4 |
Chromosome position | 81228677 |
Reported gene | PRKG2 |
Mapped gene | PRKG2 - RASGEF1B |
Upstream gene id | 5593 |
Downstream gene id | 153020 |
SNP gene ids | |
Upstream gene distance | 11934 |
Downstream gene distance | 197716 |
SNP risk allele | rs710841-? |
SNPs | rs710841 |
Merged | 0 |
SNP id current | 710841 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.12 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.07 |
%95 Ci | [0.04-0.10] s.d. increase |
Platform | Illumina [229216] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000372 |
PubMed ID | 18391951 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18391951 |
Study | Many sequence variants affecting diversity of adult human height. |
Disease/Trait | Height |
Initial sample | 30,968 European ancestry individuals |
Replication sample | 8,541 European ancestry individuals |
Region | 4q21.21 |
Chromosome id | chr4 |
Chromosome position | 81228677 |
Reported gene | BMP3, PRKG2, RASGEF1B |
Mapped gene | PRKG2 - RASGEF1B |
Upstream gene id | 5593 |
Downstream gene id | 153020 |
SNP gene ids | |
Upstream gene distance | 11934 |
Downstream gene distance | 197716 |
SNP risk allele | rs710841-A |
SNPs | rs710841 |
Merged | 0 |
SNP id current | 710841 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 5 |
%95 Ci | [3.04-6.96] % s.d. increase |
Platform | Affymetrix, Illumina [up to 304226] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000175 |