SNP Detail For rs710841
1.Mapping Information
Human SNP ID rs710841
Human chromosome chr4
Human SNP position 81228677
Pig chromosome chr8
Pig SNP position 146038827
2.Annotation Information
PubMed ID19343178
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19343178
StudyMeta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size.
Disease/TraitHeight
Initial sample12,611 European ancestry individuals
Replication sample7,187 European ancestry individuals
Region4q21.21
Chromosome idchr4
Chromosome position81228677
Reported genePRKG2
Mapped genePRKG2 - RASGEF1B
Upstream gene id5593
Downstream gene id153020
SNP gene ids
Upstream gene distance11934
Downstream gene distance197716
SNP risk allelers710841-?
SNPsrs710841
Merged0
SNP id current710841
Contextintergenic_variant
Intergenic1
Allele frequency0.12
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.07
%95 Ci[0.04-0.10] s.d. increase
PlatformIllumina [229216]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000372
PubMed ID18391951
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391951
StudyMany sequence variants affecting diversity of adult human height.
Disease/TraitHeight
Initial sample30,968 European ancestry individuals
Replication sample8,541 European ancestry individuals
Region4q21.21
Chromosome idchr4
Chromosome position81228677
Reported geneBMP3, PRKG2, RASGEF1B
Mapped genePRKG2 - RASGEF1B
Upstream gene id5593
Downstream gene id153020
SNP gene ids
Upstream gene distance11934
Downstream gene distance197716
SNP risk allelers710841-A
SNPsrs710841
Merged0
SNP id current710841
Contextintergenic_variant
Intergenic1
Allele frequency0.27
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta5
%95 Ci[3.04-6.96] % s.d. increase
PlatformAffymetrix, Illumina [up to 304226]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000175