Human SNP ID | rs7101378 |
---|---|
Human chromosome | chr11 |
Human SNP position | 109022640 |
Pig chromosome | chr9 |
Pig SNP position | 41730753 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 11q22.3 |
Chromosome id | chr11 |
Chromosome position | 109022640 |
Reported gene | NR |
Mapped gene | DDX10 - C11orf87 |
Upstream gene id | 1662 |
Downstream gene id | 399947 |
SNP gene ids | |
Upstream gene distance | 81710 |
Downstream gene distance | 399088 |
SNP risk allele | rs7101378-G |
SNPs | rs7101378 |
Merged | 0 |
SNP id current | 7101378 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.531881765256125 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (IGP29) |
Or beta | 0.1398 |
%95 Ci | [0.079-0.201] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |