SNP Detail For rs7078439
1.Mapping Information
Human SNP ID rs7078439
Human chromosome chr10
Human SNP position 126731415
Pig chromosome chr14
Pig SNP position 147713528
2.Annotation Information
PubMed ID25517131
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/25517131
StudyNovel Genes for Airway Wall Thickness Identified with Combined Genome Wide Association and Expression Analyses.
Disease/TraitAirway wall thickness
Initial sample2,640 individuals
Replication sampleup to 714 individuals
Region10q26.2
Chromosome idchr10
Chromosome position126731415
Reported geneC10orf90, DOCK1
Mapped geneC10orf90 - LOC105378550
Upstream gene id118611
Downstream gene id105378550
SNP gene ids
Upstream gene distance60377
Downstream gene distance172003
SNP risk allelers7078439-?
SNPsrs7078439
Merged0
SNP id current7078439
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.034
%95 Ci[NR] unit increase
PlatformIllumina [522636]
CNVN
Mapped traitairway wall thickness measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006898
Study accessionGCST002794
PubMed ID25517131
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/25517131
StudyNovel Genes for Airway Wall Thickness Identified with Combined Genome Wide Association and Expression Analyses.
Disease/TraitAirway wall thickness
Initial sample2,640 individuals
Replication sampleup to 714 individuals
Region10q26.2
Chromosome idchr10
Chromosome position126731415
Reported geneC10orf90, DOCK1
Mapped geneC10orf90 - LOC105378550
Upstream gene id118611
Downstream gene id105378550
SNP gene ids
Upstream gene distance60377
Downstream gene distance172003
SNP risk allelers7078439-?
SNPsrs7078439
Merged0
SNP id current7078439
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(FEV1/FVC < 80%)
Or beta0.044
%95 Ci[NR] unit increase
PlatformIllumina [522636]
CNVN
Mapped traitairway wall thickness measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006898
Study accessionGCST002794