SNP Detail For rs707824
1.Mapping Information
Human SNP ID rs707824
Human chromosome chr6
Human SNP position 14636732
Pig chromosome chr7
Pig SNP position 11361236
2.Annotation Information
PubMed ID23349640
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23349640
StudySusceptibility loci associated with specific and shared subtypes of lymphoid malignancies.
Disease/TraitLymphoma
Initial sample275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls
Replication sample202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro
Region6p23
Chromosome idchr6
Chromosome position14636732
Reported geneJARID2, RNF182
Mapped geneLOC101928354
Upstream gene id
Downstream gene id
SNP gene ids101928354
Upstream gene distance
Downstream gene distance
SNP risk allelers707824-T
SNPsrs707824
Merged0
SNP id current707824
Contextregulatory_region_variant
Intergenic0
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text(NHL)
Or beta1.33
%95 Ci[1.17-1.47]
PlatformAffymetrix [530583]
CNVN
Mapped traitlymphoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000574
Study accessionGCST001826