Human SNP ID | rs707824 |
---|---|
Human chromosome | chr6 |
Human SNP position | 14636732 |
Pig chromosome | chr7 |
Pig SNP position | 11361236 |
PubMed ID | 23349640 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23349640 |
Study | Susceptibility loci associated with specific and shared subtypes of lymphoid malignancies. |
Disease/Trait | Lymphoma |
Initial sample | 275 Follicular non-Hodgkin__s Lymphoma cases, 269 diffuse large B-cell non-Hodgkin__s Lymphoma cases, 198 other non-Hodgkin__s Lymphoma cases, 202 Hodgkin__s Lymphoma cases, 4,044 controls |
Replication sample | 202 European ancestry Follicular non-Hodgkin__s Lymphoma cases, 367 European ancestry diffuse large B-cell non-Hodgkin__s Lymphoma cases, 577 European ancestry other non-Hodgkin__s Lymphoma cases, 99 European ancestry Hodgkin__s Lymphoma cases, 2,596 Euro |
Region | 6p23 |
Chromosome id | chr6 |
Chromosome position | 14636732 |
Reported gene | JARID2, RNF182 |
Mapped gene | LOC101928354 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928354 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs707824-T |
SNPs | rs707824 |
Merged | 0 |
SNP id current | 707824 |
Context | regulatory_region_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (NHL) |
Or beta | 1.33 |
%95 Ci | [1.17-1.47] |
Platform | Affymetrix [530583] |
CNV | N |
Mapped trait | lymphoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000574 |
Study accession | GCST001826 |