Human SNP ID | rs7071206 |
---|---|
Human chromosome | chr10 |
Human SNP position | 77641558 |
Pig chromosome | chr14 |
Pig SNP position | 86644473 |
PubMed ID | 22504420 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 77641558 |
Reported gene | KCNMA1 |
Mapped gene | KCNMA1 - LOC105378372 |
Upstream gene id | 3778 |
Downstream gene id | 105378372 |
SNP gene ids | |
Upstream gene distance | 3739 |
Downstream gene distance | 60885 |
SNP risk allele | rs7071206-T |
SNPs | rs7071206 |
Merged | 0 |
SNP id current | 7071206 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.78 |
P value | 5E-19 |
Pvalue mlog | 18.3010299956639 |
P value text | (LSBMD) |
Or beta | 0.06 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |