Human SNP ID | rs7051085 |
---|---|
Human chromosome | chrX |
Human SNP position | 23356860 |
Pig chromosome | chrX |
Pig SNP position | 20874399 |
PubMed ID | 25897834 |
---|---|
Journal | Transl Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25897834 |
Study | The International SSRI Pharmacogenomics Consortium (ISPC): a genome-wide association study of antidepressant treatment response. |
Disease/Trait | Response to serotonin reuptake inhibitors in major depressive disorder |
Initial sample | 298 European ancestry cases, 567 Asian ancestry cases, 1529 European and other ancestry cases |
Replication sample | NA |
Region | Xp22.11 |
Chromosome id | chrX |
Chromosome position | 23356860 |
Reported gene | PTCHD1 |
Mapped gene | PTCHD1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 139411 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7051085-? |
SNPs | rs7051085 |
Merged | 0 |
SNP id current | 7051085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (Response) |
Or beta | 1.59 |
%95 Ci | [NR] |
Platform | Illumina [~ 7000000] (imputed) |
CNV | N |
Mapped trait | unipolar depression, response to selective serotonin reuptake inhibitor |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0005658 |
Study accession | GCST002868 |