Human SNP ID | rs704010 |
---|---|
Human chromosome | chr10 |
Human SNP position | 79081391 |
Pig chromosome | chr14 |
Pig SNP position | 88077822 |
PubMed ID | 20453838 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20453838 |
Study | Genome-wide association study identifies five new breast cancer susceptibility loci. |
Disease/Trait | Breast cancer |
Initial sample | 3,659 European ancestry cases, 4,897 European ancestry controls |
Replication sample | 12,576 European ancestry cases, 12,223 European ancestry controls |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 79081391 |
Reported gene | ZMIZ1 |
Mapped gene | ZMIZ1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57178 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs704010-A |
SNPs | rs704010 |
Merged | 0 |
SNP id current | 704010 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.03-1.11] |
Platform | Illumina [582886] |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST000678 |
PubMed ID | 23535729 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 79081391 |
Reported gene | ZMIZ1 |
Mapped gene | ZMIZ1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57178 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs704010-T |
SNPs | rs704010 |
Merged | 0 |
SNP id current | 704010 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 7E-22 |
Pvalue mlog | 21.1549019599857 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.06-1.10] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |