SNP Detail For rs704010
1.Mapping Information
Human SNP ID rs704010
Human chromosome chr10
Human SNP position 79081391
Pig chromosome chr14
Pig SNP position 88077822
2.Annotation Information
PubMed ID20453838
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20453838
StudyGenome-wide association study identifies five new breast cancer susceptibility loci.
Disease/TraitBreast cancer
Initial sample3,659 European ancestry cases, 4,897 European ancestry controls
Replication sample12,576 European ancestry cases, 12,223 European ancestry controls
Region10q22.3
Chromosome idchr10
Chromosome position79081391
Reported geneZMIZ1
Mapped geneZMIZ1
Upstream gene id
Downstream gene id
SNP gene ids57178
Upstream gene distance
Downstream gene distance
SNP risk allelers704010-A
SNPsrs704010
Merged0
SNP id current704010
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.000000004
Pvalue mlog8.39794000867203
P value text
Or beta1.07
%95 Ci[1.03-1.11]
PlatformIllumina [582886]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST000678
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region10q22.3
Chromosome idchr10
Chromosome position79081391
Reported geneZMIZ1
Mapped geneZMIZ1
Upstream gene id
Downstream gene id
SNP gene ids57178
Upstream gene distance
Downstream gene distance
SNP risk allelers704010-T
SNPsrs704010
Merged0
SNP id current704010
Contextintron_variant
Intergenic0
Allele frequency0.38
P value7E-22
Pvalue mlog21.1549019599857
P value text
Or beta1.08
%95 Ci[1.06-1.10]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937