SNP Detail For rs703556
1.Mapping Information
Human SNP ID rs703556
Human chromosome chr12
Human SNP position 102618116
Pig chromosome chr5
Pig SNP position 85576696
2.Annotation Information
PubMed ID25342443
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25342443
StudyGenome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.
Disease/TraitMammographic density (dense area)
Initial sample7,600 European ancestry individuals
Replication sample343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals
Region12q23.2
Chromosome idchr12
Chromosome position102618116
Reported geneIGF1
Mapped geneIGF1 - LINC00485
Upstream gene id3479
Downstream gene id283432
SNP gene ids
Upstream gene distance136330
Downstream gene distance191167
SNP risk allelers703556-A
SNPsrs703556
Merged0
SNP id current703556
Contextintergenic_variant
Intergenic1
Allele frequency0.98
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta0.41
%95 Ci[0.25-0.57] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitdense area measurement, mammographic density measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006503, http://www.ebi.ac.uk/efo/EFO_0005941
Study accessionGCST002667