Human SNP ID | rs703556 |
---|---|
Human chromosome | chr12 |
Human SNP position | 102618116 |
Pig chromosome | chr5 |
Pig SNP position | 85576696 |
PubMed ID | 25342443 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25342443 |
Study | Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. |
Disease/Trait | Mammographic density (dense area) |
Initial sample | 7,600 European ancestry individuals |
Replication sample | 343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals |
Region | 12q23.2 |
Chromosome id | chr12 |
Chromosome position | 102618116 |
Reported gene | IGF1 |
Mapped gene | IGF1 - LINC00485 |
Upstream gene id | 3479 |
Downstream gene id | 283432 |
SNP gene ids | |
Upstream gene distance | 136330 |
Downstream gene distance | 191167 |
SNP risk allele | rs703556-A |
SNPs | rs703556 |
Merged | 0 |
SNP id current | 703556 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.98 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.41 |
%95 Ci | [0.25-0.57] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | dense area measurement, mammographic density measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006503, http://www.ebi.ac.uk/efo/EFO_0005941 |
Study accession | GCST002667 |