Human SNP ID | rs7034200 |
---|---|
Human chromosome | chr9 |
Human SNP position | 4289050 |
Pig chromosome | chr1 |
Pig SNP position | 243432611 |
PubMed ID | 20081858 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20081858 |
Study | New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. |
Disease/Trait | Fasting glucose-related traits |
Initial sample | up to 46,186 European ancestry individuals |
Replication sample | up to 76,558 European ancestry individuals |
Region | 9p24.2 |
Chromosome id | chr9 |
Chromosome position | 4289050 |
Reported gene | GLIS3 |
Mapped gene | GLIS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 169792 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7034200-A |
SNPs | rs7034200 |
Merged | 0 |
SNP id current | 7034200 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | (FPG) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | fasting blood glucose measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004465 |
Study accession | GCST000568 |
PubMed ID | 20081858 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20081858 |
Study | New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. |
Disease/Trait | Fasting glucose-related traits |
Initial sample | up to 46,186 European ancestry individuals |
Replication sample | up to 76,558 European ancestry individuals |
Region | 9p24.2 |
Chromosome id | chr9 |
Chromosome position | 4289050 |
Reported gene | GLIS3 |
Mapped gene | GLIS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 169792 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7034200-A |
SNPs | rs7034200 |
Merged | 0 |
SNP id current | 7034200 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | (HOMA-B) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | HOMA-B |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004469 |
Study accession | GCST000568 |
PubMed ID | 22581228 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22581228 |
Study | A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance. |
Disease/Trait | Fasting glucose-related traits (interaction with BMI) |
Initial sample | Up to 58,074 European ancestry individuals |
Replication sample | Up tp 38,422 European ancestry individuals |
Region | 9p24.2 |
Chromosome id | chr9 |
Chromosome position | 4289050 |
Reported gene | GLIS3 |
Mapped gene | GLIS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 169792 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7034200-? |
SNPs | rs7034200 |
Merged | 0 |
SNP id current | 7034200 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2400000] (imputed) |
CNV | N |
Mapped trait | body mass index, fasting blood glucose measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340, http://www.ebi.ac.uk/efo/EFO_0004465 |
Study accession | GCST001527 |