Human SNP ID | rs7023329 |
---|---|
Human chromosome | chr9 |
Human SNP position | 21816529 |
Pig chromosome | chr1 |
Pig SNP position | 224113654 |
PubMed ID | 21983787 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21983787 |
Study | Genome-wide association study identifies three new melanoma susceptibility loci. |
Disease/Trait | Melanoma |
Initial sample | 2,804 European ancestry cases, 7,618 European ancestry controls |
Replication sample | 5,551 European ancestry cases, 7,449 European ancestry controls |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 21816529 |
Reported gene | MTAP, CDKN2A |
Mapped gene | MTAP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4507 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7023329-? |
SNPs | rs7023329 |
Merged | 0 |
SNP id current | 7023329 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.51 |
P value | 0.000000007 |
Pvalue mlog | 8.15490195998574 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.14-1.28] |
Platform | Illumina [594997] |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST001267 |
PubMed ID | 19578364 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19578364 |
Study | Genome-wide association study identifies three loci associated with melanoma risk. |
Disease/Trait | Melanoma |
Initial sample | 1,539 European ancestry cases, 3,917 European ancestry controls |
Replication sample | 2,312 European ancestry cases, 1,867 European ancestry controls |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 21816529 |
Reported gene | CDKN2A |
Mapped gene | MTAP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4507 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7023329-A |
SNPs | rs7023329 |
Merged | 0 |
SNP id current | 7023329 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.10-1.25] |
Platform | Illumina [~ 317000] |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST000437 |