SNP Detail For rs7023329
1.Mapping Information
Human SNP ID rs7023329
Human chromosome chr9
Human SNP position 21816529
Pig chromosome chr1
Pig SNP position 224113654
2.Annotation Information
PubMed ID21983787
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21983787
StudyGenome-wide association study identifies three new melanoma susceptibility loci.
Disease/TraitMelanoma
Initial sample2,804 European ancestry cases, 7,618 European ancestry controls
Replication sample5,551 European ancestry cases, 7,449 European ancestry controls
Region9p21.3
Chromosome idchr9
Chromosome position21816529
Reported geneMTAP, CDKN2A
Mapped geneMTAP
Upstream gene id
Downstream gene id
SNP gene ids4507
Upstream gene distance
Downstream gene distance
SNP risk allelers7023329-?
SNPsrs7023329
Merged0
SNP id current7023329
Contextintron_variant
Intergenic0
Allele frequency0.51
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta1.2
%95 Ci[1.14-1.28]
PlatformIllumina [594997]
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST001267
PubMed ID19578364
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19578364
StudyGenome-wide association study identifies three loci associated with melanoma risk.
Disease/TraitMelanoma
Initial sample1,539 European ancestry cases, 3,917 European ancestry controls
Replication sample2,312 European ancestry cases, 1,867 European ancestry controls
Region9p21.3
Chromosome idchr9
Chromosome position21816529
Reported geneCDKN2A
Mapped geneMTAP
Upstream gene id
Downstream gene id
SNP gene ids4507
Upstream gene distance
Downstream gene distance
SNP risk allelers7023329-A
SNPsrs7023329
Merged0
SNP id current7023329
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.18
%95 Ci[1.10-1.25]
PlatformIllumina [~ 317000]
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST000437