SNP Detail For rs7021663
1.Mapping Information
Human SNP ID rs7021663
Human chromosome chr9
Human SNP position 133810892
Pig chromosome chr1
Pig SNP position 307319664
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region9q34.2
Chromosome idchr9
Chromosome position133810892
Reported geneNR
Mapped geneVAV2
Upstream gene id
Downstream gene id
SNP gene ids7410
Upstream gene distance
Downstream gene distance
SNP risk allelers7021663-C
SNPsrs7021663
Merged0
SNP id current7021663
Contextintron_variant
Intergenic0
Allele frequency0.209934371046771
P value0.000003
Pvalue mlog5.52287874528033
P value text(IGP63)
Or beta0.1807
%95 Ci[0.1-0.26] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848