SNP Detail For rs7018475
1.Mapping Information
Human SNP ID rs7018475
Human chromosome chr9
Human SNP position 22137686
Pig chromosome chr1
Pig SNP position 223786602
2.Annotation Information
PubMed ID22293688
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22293688
Study1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data.
Disease/TraitType 2 diabetes
Initial sample16,179 European ancestry individuals
Replication sampleNA
Region9p21.3
Chromosome idchr9
Chromosome position22137686
Reported geneCDKN2B
Mapped geneCDKN2B-AS1 - DMRTA1
Upstream gene id100048912
Downstream gene id63951
SNP gene ids
Upstream gene distance16589
Downstream gene distance309155
SNP risk allelers7018475-?
SNPsrs7018475
Merged0
SNP id current7018475
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text
Or beta1.35
%95 Ci[1.18-1.56]
PlatformNR [6233112] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST001397
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region9p21.3
Chromosome idchr9
Chromosome position22137686
Reported geneCDKN2B-AS1, DMRTA1
Mapped geneCDKN2B-AS1 - DMRTA1
Upstream gene id100048912
Downstream gene id63951
SNP gene ids
Upstream gene distance16589
Downstream gene distance309155
SNP risk allelers7018475-?
SNPsrs7018475
Merged0
SNP id current7018475
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text(AIRg)
Or beta1.64
%95 Ci[0.97-2.31] unit decrease
PlatformIllumina [693128]
CNVN
Mapped traitglucose homeostasis measurement, acute insulin response measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006896, http://www.ebi.ac.uk/efo/EFO_0006831
Study accessionGCST002726