Human SNP ID | rs7018475 |
---|---|
Human chromosome | chr9 |
Human SNP position | 22137686 |
Pig chromosome | chr1 |
Pig SNP position | 223786602 |
PubMed ID | 22293688 |
---|---|
Journal | Eur J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22293688 |
Study | 1000 Genomes-based imputation identifies novel and refined associations for the Wellcome Trust Case Control Consortium phase 1 Data. |
Disease/Trait | Type 2 diabetes |
Initial sample | 16,179 European ancestry individuals |
Replication sample | NA |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 22137686 |
Reported gene | CDKN2B |
Mapped gene | CDKN2B-AS1 - DMRTA1 |
Upstream gene id | 100048912 |
Downstream gene id | 63951 |
SNP gene ids | |
Upstream gene distance | 16589 |
Downstream gene distance | 309155 |
SNP risk allele | rs7018475-? |
SNPs | rs7018475 |
Merged | 0 |
SNP id current | 7018475 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.18-1.56] |
Platform | NR [6233112] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST001397 |
PubMed ID | 25524916 |
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/25524916 |
Study | Genetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium. |
Disease/Trait | Glucose homeostasis traits |
Initial sample | up to 4,176 Mexican American individuals |
Replication sample | NA |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 22137686 |
Reported gene | CDKN2B-AS1, DMRTA1 |
Mapped gene | CDKN2B-AS1 - DMRTA1 |
Upstream gene id | 100048912 |
Downstream gene id | 63951 |
SNP gene ids | |
Upstream gene distance | 16589 |
Downstream gene distance | 309155 |
SNP risk allele | rs7018475-? |
SNPs | rs7018475 |
Merged | 0 |
SNP id current | 7018475 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (AIRg) |
Or beta | 1.64 |
%95 Ci | [0.97-2.31] unit decrease |
Platform | Illumina [693128] |
CNV | N |
Mapped trait | glucose homeostasis measurement, acute insulin response measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006896, http://www.ebi.ac.uk/efo/EFO_0006831 |
Study accession | GCST002726 |