Human SNP ID | rs701428 |
---|---|
Human chromosome | chr22 |
Human SNP position | 20241019 |
Pig chromosome | chr14 |
Pig SNP position | 55215764 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 22q11.21 |
Chromosome id | chr22 |
Chromosome position | 20241019 |
Reported gene | RTN4R |
Mapped gene | LOC105372863 - RTN4R |
Upstream gene id | 105372863 |
Downstream gene id | 65078 |
SNP gene ids | |
Upstream gene distance | 5064 |
Downstream gene distance | 396 |
SNP risk allele | rs701428-G |
SNPs | rs701428 |
Merged | 0 |
SNP id current | 701428 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.472 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (MCP1 ) |
Or beta | 0.04 |
%95 Ci | [NR] pg/mL increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | CCL2 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004749 |
Study accession | GCST001762 |