SNP Detail For rs701428
1.Mapping Information
Human SNP ID rs701428
Human chromosome chr22
Human SNP position 20241019
Pig chromosome chr14
Pig SNP position 55215764
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region22q11.21
Chromosome idchr22
Chromosome position20241019
Reported geneRTN4R
Mapped geneLOC105372863 - RTN4R
Upstream gene id105372863
Downstream gene id65078
SNP gene ids
Upstream gene distance5064
Downstream gene distance396
SNP risk allelers701428-G
SNPsrs701428
Merged0
SNP id current701428
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.472
P value0.000002
Pvalue mlog5.69897000433601
P value text(MCP1 )
Or beta0.04
%95 Ci[NR] pg/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitCCL2 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004749
Study accessionGCST001762