SNP Detail For rs700752
1.Mapping Information
Human SNP ID rs700752
Human chromosome chr7
Human SNP position 46713955
Pig chromosome chr18
Pig SNP position 54324493
2.Annotation Information
PubMed ID21216879
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21216879
StudyA genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.
Disease/TraitInsulin-like growth factors
Initial sample10,280 European ancestry individuals
Replication sampleNA
Region7p12.3
Chromosome idchr7
Chromosome position46713955
Reported geneTNS3
Mapped geneLOC730338 - LOC105375267
Upstream gene id730338
Downstream gene id105375267
SNP gene ids
Upstream gene distance16833
Downstream gene distance255737
SNP risk allelers700752-G
SNPsrs700752
Merged0
SNP id current700752
Contextintron_variant
Intergenic1
Allele frequency0.65
P value4E-21
Pvalue mlog20.397940008672
P value text(IGFBP-3)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitIGFBP-3 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004626
Study accessionGCST000937
PubMed ID21216879
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21216879
StudyA genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.
Disease/TraitInsulin-like growth factors
Initial sample10,280 European ancestry individuals
Replication sampleNA
Region7p12.3
Chromosome idchr7
Chromosome position46713955
Reported geneTNS3
Mapped geneLOC730338 - LOC105375267
Upstream gene id730338
Downstream gene id105375267
SNP gene ids
Upstream gene distance16833
Downstream gene distance255737
SNP risk allelers700752-G
SNPsrs700752
Merged0
SNP id current700752
Contextintron_variant
Intergenic1
Allele frequency0.65
P value0.000000005
Pvalue mlog8.30102999566398
P value text(IGF-I)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitIGF-1 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004627
Study accessionGCST000937