Human SNP ID | rs7001413 |
---|---|
Human chromosome | chr8 |
Human SNP position | 74097998 |
Pig chromosome | chr4 |
Pig SNP position | 67568144 |
PubMed ID | 24954085 |
---|---|
Journal | J Neurol Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/24954085 |
Study | Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics. |
Disease/Trait | Carotid plaque burden (smoking interaction) |
Initial sample | 665 Hispanic individuals |
Replication sample | 264 Hispanic indivduals |
Region | 8q21.11 |
Chromosome id | chr8 |
Chromosome position | 74097998 |
Reported gene | LY96, JPH1 |
Mapped gene | RPS3AP32 - LOC105375903 |
Upstream gene id | 100271258 |
Downstream gene id | 105375903 |
SNP gene ids | |
Upstream gene distance | 41308 |
Downstream gene distance | 101396 |
SNP risk allele | rs7001413-T |
SNPs | rs7001413 |
Merged | 0 |
SNP id current | 7001413 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.63 |
%95 Ci | [0.36-0.90] unit decrease |
Platform | Affymetrix [722379] |
CNV | N |
Mapped trait | carotid plaque build |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006501 |
Study accession | GCST002482 |