SNP Detail For rs7001413
1.Mapping Information
Human SNP ID rs7001413
Human chromosome chr8
Human SNP position 74097998
Pig chromosome chr4
Pig SNP position 67568144
2.Annotation Information
PubMed ID24954085
JournalJ Neurol Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/24954085
StudyNovel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics.
Disease/TraitCarotid plaque burden (smoking interaction)
Initial sample665 Hispanic individuals
Replication sample264 Hispanic indivduals
Region8q21.11
Chromosome idchr8
Chromosome position74097998
Reported geneLY96, JPH1
Mapped geneRPS3AP32 - LOC105375903
Upstream gene id100271258
Downstream gene id105375903
SNP gene ids
Upstream gene distance41308
Downstream gene distance101396
SNP risk allelers7001413-T
SNPsrs7001413
Merged0
SNP id current7001413
Contextintron_variant
Intergenic1
Allele frequency0.08
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.63
%95 Ci[0.36-0.90] unit decrease
PlatformAffymetrix [722379]
CNVN
Mapped traitcarotid plaque build
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006501
Study accessionGCST002482