SNP Detail For rs6993270
1.Mapping Information
Human SNP ID rs6993270
Human chromosome chr8
Human SNP position 119929476
Pig chromosome chr4
Pig SNP position 20120135
2.Annotation Information
PubMed ID26297903
JournalProg Neuropsychopharmacol Biol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/26297903
StudyGenetics of long-term treatment outcome in bipolar disorder.
Disease/TraitDepressive episodes in bipolar disorder
Initial sample723 European ancestry cases
Replication sampleNA
Region8q24.12
Chromosome idchr8
Chromosome position119929476
Reported geneDEPTOR
Mapped geneDEPTOR
Upstream gene id
Downstream gene id
SNP gene ids64798
Upstream gene distance
Downstream gene distance
SNP risk allelers6993270-?
SNPsrs6993270
Merged
SNP id current6993270
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.12
%95 Ci[NR] unit increase
PlatformAffymetrix [329806] (imputed)
CNVN
Mapped traitdepressive episode measurement, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007704, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST003091
PubMed ID26297903
JournalProg Neuropsychopharmacol Biol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/26297903
StudyGenetics of long-term treatment outcome in bipolar disorder.
Disease/TraitDepressive and manic episodes in bipolar disorder
Initial sample723 European ancestry cases
Replication sampleNA
Region8q24.12
Chromosome idchr8
Chromosome position119929476
Reported geneDEPTOR
Mapped geneDEPTOR
Upstream gene id
Downstream gene id
SNP gene ids64798
Upstream gene distance
Downstream gene distance
SNP risk allelers6993270-?
SNPsrs6993270
Merged
SNP id current6993270
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta0.14
%95 Ci[NR] unit increase
PlatformAffymetrix [329806]
CNVN
Mapped traitmanic episode measurement, depressive episode measurement, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007705, http://www.ebi.ac.uk/efo/EFO_0007704, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST003090