SNP Detail For rs6990255
1.Mapping Information
Human SNP ID rs6990255
Human chromosome chr8
Human SNP position 34269430
Pig chromosome chr15
Pig SNP position 59051853
2.Annotation Information
PubMed ID19416921
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19416921
StudyGenome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.
Disease/TraitBipolar disorder
Initial sample3,683 European ancestry cases, 14,507 European ancestry controls
Replication sampleNA
Region8p12
Chromosome idchr8
Chromosome position34269430
Reported geneNR
Mapped geneLOC105379365 - RPL10AP3
Upstream gene id105379365
Downstream gene id137107
SNP gene ids
Upstream gene distance41799
Downstream gene distance53530
SNP risk allelers6990255-T
SNPsrs6990255
Merged0
SNP id current6990255
Contextintron_variant
Intergenic1
Allele frequency0.95
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.33
%95 Ci[1.18-1.51]
PlatformAffymetrix, Illumina [2366197] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST000387
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region8p12
Chromosome idchr8
Chromosome position34269430
Reported geneintergenic
Mapped geneLOC105379365 - RPL10AP3
Upstream gene id105379365
Downstream gene id137107
SNP gene ids
Upstream gene distance41799
Downstream gene distance53530
SNP risk allelers6990255-T
SNPsrs6990255
Merged0
SNP id current6990255
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(5 degree of freedom test)
Or beta1.146
%95 Ci[1.09-1.20]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877