SNP Detail For rs697739
1.Mapping Information
Human SNP ID rs697739
Human chromosome chr6
Human SNP position 16741802
Pig chromosome chr7
Pig SNP position 13302742
2.Annotation Information
PubMed ID19451621
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19451621
StudyReduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis
Initial sample1,821 cases, 2,258 controls
Replication sample538 cases, 556 controls
Region6p22.3
Chromosome idchr6
Chromosome position16741802
Reported geneATXN1
Mapped geneATXN1
Upstream gene id
Downstream gene id
SNP gene ids6310
Upstream gene distance
Downstream gene distance
SNP risk allelers697739-A
SNPsrs697739
Merged0
SNP id current697739
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(age of onset)
Or beta2.04
%95 Ci[1.18-2.90] years decrease
PlatformIllumina [288357]
CNVN
Mapped traitamyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000253
Study accessionGCST000406