SNP Detail For rs6972204
1.Mapping Information
Human SNP ID rs6972204
Human chromosome chr7
Human SNP position 2542818
Pig chromosome chr3
Pig SNP position 2114173
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region7p22.3
Chromosome idchr7
Chromosome position2542818
Reported geneBRAT1
Mapped geneBRAT1
Upstream gene id
Downstream gene id
SNP gene ids221927
Upstream gene distance
Downstream gene distance
SNP risk allelers6972204-G
SNPsrs6972204
Merged0
SNP id current6972204
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.171
P value0.000005
Pvalue mlog5.30102999566398
P value text(Bike energy expenditure )
Or beta0.03
%95 Ci[NR] kcal/min increase
PlatformIllumina [899892]
CNVN
Mapped traitenergy expenditure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005109
Study accessionGCST001762