SNP Detail For rs6971925
1.Mapping Information
Human SNP ID rs6971925
Human chromosome chr7
Human SNP position 14406292
Pig chromosome chr9
Pig SNP position 92140046
2.Annotation Information
PubMed ID19176441
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/19176441
StudyGenome-wide interrogation of germline genetic variation associated with treatment response in childhood acute lymphoblastic leukemia.
Disease/TraitResponse to treatment for acute lymphoblastic leukemia
Initial sample356 European ancestry cases, 53 Black cases, 78 cases
Replication sampleNA
Region7p21.2
Chromosome idchr7
Chromosome position14406292
Reported geneDGKB
Mapped geneDGKB
Upstream gene id
Downstream gene id
SNP gene ids1607
Upstream gene distance
Downstream gene distance
SNP risk allelers6971925-T
SNPsrs6971925
Merged0
SNP id current6971925
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta13.91
%95 Ci[2.72-70.92]
PlatformAffymetrix [476796]
CNVN
Mapped traitacute lymphoblastic leukemia, response to antineoplastic agent
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST000323