SNP Detail For rs6971499
1.Mapping Information
Human SNP ID rs6971499
Human chromosome chr7
Human SNP position 130995762
Pig chromosome chr18
Pig SNP position 18928377
2.Annotation Information
PubMed ID25086665
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25086665
StudyGenome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
Disease/TraitPancreatic cancer
Initial sample1,582 European ancestry cases, 5,203 European ancestry controls
Replication sample6,101 European ancestry cases, 9,194 European ancestry controls
Region7q32.3
Chromosome idchr7
Chromosome position130995762
Reported geneCOPG2, TSGA13, KLF14, MIR29A, MIR29B1, LOC646329, LINC-PINT, MKLN1
Mapped geneLINC-PINT
Upstream gene id
Downstream gene id
SNP gene ids378805
Upstream gene distance
Downstream gene distance
SNP risk allelers6971499-T
SNPsrs6971499
Merged0
SNP id current6971499
Contextintron_variant
Intergenic0
Allele frequency0.853
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta1.27
%95 Ci[1.19-1.35]
PlatformIllumina [608202]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST002553
PubMed ID26098869
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26098869
StudyCommon variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer.
Disease/TraitPancreatic cancer
Initial sample7,638 cases, 7,364 controls
Replication sample2,287 cases, 4,205 controls
Region7q32.3
Chromosome idchr7
Chromosome position130995762
Reported geneLINC-PINT
Mapped geneLINC-PINT
Upstream gene id
Downstream gene id
SNP gene ids378805
Upstream gene distance
Downstream gene distance
SNP risk allelers6971499-?
SNPsrs6971499
Merged0
SNP id current6971499
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.2345679
%95 Ci[1.14-1.35]
PlatformIllumina [866891] (imputed)
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST002991