Human SNP ID | rs6971499 |
---|---|
Human chromosome | chr7 |
Human SNP position | 130995762 |
Pig chromosome | chr18 |
Pig SNP position | 18928377 |
PubMed ID | 25086665 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25086665 |
Study | Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 1,582 European ancestry cases, 5,203 European ancestry controls |
Replication sample | 6,101 European ancestry cases, 9,194 European ancestry controls |
Region | 7q32.3 |
Chromosome id | chr7 |
Chromosome position | 130995762 |
Reported gene | COPG2, TSGA13, KLF14, MIR29A, MIR29B1, LOC646329, LINC-PINT, MKLN1 |
Mapped gene | LINC-PINT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 378805 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6971499-T |
SNPs | rs6971499 |
Merged | 0 |
SNP id current | 6971499 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.853 |
P value | 0.000000000003 |
Pvalue mlog | 11.5228787452803 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.19-1.35] |
Platform | Illumina [608202] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002553 |
PubMed ID | 26098869 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26098869 |
Study | Common variation at 2p13.3, 3q29, 7p13 and 17q25.1 associated with susceptibility to pancreatic cancer. |
Disease/Trait | Pancreatic cancer |
Initial sample | 7,638 cases, 7,364 controls |
Replication sample | 2,287 cases, 4,205 controls |
Region | 7q32.3 |
Chromosome id | chr7 |
Chromosome position | 130995762 |
Reported gene | LINC-PINT |
Mapped gene | LINC-PINT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 378805 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6971499-? |
SNPs | rs6971499 |
Merged | 0 |
SNP id current | 6971499 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.2345679 |
%95 Ci | [1.14-1.35] |
Platform | Illumina [866891] (imputed) |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST002991 |