SNP Detail For rs6971109
1.Mapping Information
Human SNP ID rs6971109
Human chromosome chr7
Human SNP position 21183171
Pig chromosome chr12
Pig SNP position 33363838
2.Annotation Information
PubMed ID22864933
JournalCancer
Linkwww.ncbi.nlm.nih.gov/pubmed/22864933
StudyIdentification of novel germline polymorphisms governing capecitabine sensitivity.
Disease/TraitCapecitabine sensitivity
Initial sampleUp to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines
Replication sampleNA
Region7p15.3
Chromosome idchr7
Chromosome position21183171
Reported geneintergenic
Mapped geneLINC01162 - ASS1P11
Upstream gene id104355138
Downstream gene id340274
SNP gene ids
Upstream gene distance160023
Downstream gene distance36807
SNP risk allelers6971109-?
SNPsrs6971109
Merged0
SNP id current6971109
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformNR [~ 2000000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001368