SNP Detail For rs6967385
1.Mapping Information
Human SNP ID rs6967385
Human chromosome chr7
Human SNP position 12351693
Pig chromosome chr9
Pig SNP position 90101527
2.Annotation Information
PubMed ID23006423
JournalBMC Cancer
Linkwww.ncbi.nlm.nih.gov/pubmed/23006423
StudyGenetic association with overall survival of taxane-treated lung cancer patients - A genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Disease/TraitResponse to taxane treatment (placlitaxel)
Initial sample96 African American lymphoblastoid cell lines, 96 European ancestry lymphoblastoid cell lines, 96 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region7p21.3
Chromosome idchr7
Chromosome position12351693
Reported geneTMEM106B
Mapped geneVWDE
Upstream gene id
Downstream gene id
SNP gene ids221806
Upstream gene distance
Downstream gene distance
SNP risk allelers6967385-?
SNPsrs6967385
Merged0
SNP id current6967385
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1300000]
CNVN
Mapped traitresponse to paclitaxel
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1901555
Study accessionGCST001694