SNP Detail For rs6964969
1.Mapping Information
Human SNP ID rs6964969
Human chromosome chr7
Human SNP position 50405553
Pig chromosome chr9
Pig SNP position 150048935
2.Annotation Information
PubMed ID23512250
JournalJ Natl Cancer Inst
Linkwww.ncbi.nlm.nih.gov/pubmed/23512250
StudyNovel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls
Replication sample574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls
Region7p12.2
Chromosome idchr7
Chromosome position50405553
Reported geneDDC, GRB10, IKZF1
Mapped geneIKZF1 - FIGNL1
Upstream gene id10320
Downstream gene id63979
SNP gene ids
Upstream gene distance452
Downstream gene distance38576
SNP risk allelers6964969-C
SNPsrs6964969
Merged0
SNP id current6964969
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.28
P value2E-29
Pvalue mlog28.698970004336
P value text
Or beta1.67
%95 Ci[1.53-1.83]
PlatformAffymetrix [709059]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST001912