Human SNP ID | rs6964969 |
---|---|
Human chromosome | chr7 |
Human SNP position | 50405553 |
Pig chromosome | chr9 |
Pig SNP position | 150048935 |
PubMed ID | 23512250 |
---|---|
Journal | J Natl Cancer Inst |
Link | www.ncbi.nlm.nih.gov/pubmed/23512250 |
Study | Novel susceptibility variants at 10p12.31-12.2 for childhood acute lymphoblastic leukemia in ethnically diverse populations. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 972 European ancestry cases, 1,386 European ancestry controls, 89 African American cases, 1,363 African American controls, 305 Hispanic cases, 1,008 Hispanic controls |
Replication sample | 574 European ancestry cases, 2,601 European ancestry controls, 128 African American cases, 1,075 African American controls, 143 Hispanic cases, 640 Hispanic controls |
Region | 7p12.2 |
Chromosome id | chr7 |
Chromosome position | 50405553 |
Reported gene | DDC, GRB10, IKZF1 |
Mapped gene | IKZF1 - FIGNL1 |
Upstream gene id | 10320 |
Downstream gene id | 63979 |
SNP gene ids | |
Upstream gene distance | 452 |
Downstream gene distance | 38576 |
SNP risk allele | rs6964969-C |
SNPs | rs6964969 |
Merged | 0 |
SNP id current | 6964969 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 2E-29 |
Pvalue mlog | 28.698970004336 |
P value text | |
Or beta | 1.67 |
%95 Ci | [1.53-1.83] |
Platform | Affymetrix [709059] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST001912 |