SNP Detail For rs6960319
1.Mapping Information
Human SNP ID rs6960319
Human chromosome chr7
Human SNP position 147561539
Pig chromosome chr9
Pig SNP position 121486145
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitBody mass index
Initial sample361 Martu Australian Aboriginal ancestry individuals
Replication sampleNA
Region7q35
Chromosome idchr7
Chromosome position147561539
Reported geneCNTNAP2
Mapped geneCNTNAP2
Upstream gene id
Downstream gene id
SNP gene ids26047
Upstream gene distance
Downstream gene distance
SNP risk allelers6960319-?
SNPsrs6960319
Merged0
SNP id current6960319
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.36
%95 Ci[0.18-0.54] unit decrease
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traitlongitudinal BMI measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005937
Study accessionGCST002805