SNP Detail For rs6952407
1.Mapping Information
Human SNP ID rs6952407
Human chromosome chr7
Human SNP position 66580525
Pig chromosome chr3
Pig SNP position 16607915
2.Annotation Information
PubMed ID25293881
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/25293881
StudyThe Contribution of Common Genetic Variation to Nicotine and Cotinine Glucuronidation in Multiple Ethnic/Racial Populations.
Disease/TraitCotinine glucuronidation
Initial sample437 European ancestry current smoker individuals, 364 African American current smoker individuals, 453 Latino current smoker individuals, 674 Japanese ancestry current smoker individuals, 311 Native Hawaiian ancestry current smoker individuals
Replication sampleNA
Region7q11.21
Chromosome idchr7
Chromosome position66580525
Reported geneLOC493754, KCTD7
Mapped geneLOC493754
Upstream gene id
Downstream gene id
SNP gene ids493754
Upstream gene distance
Downstream gene distance
SNP risk allelers6952407-A
SNPsrs6952407
Merged0
SNP id current6952407
Contextupstream_gene_variant
Intergenic0
Allele frequencyNR
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta0.033
%95 Ci[NR] unit increase
PlatformIllumina [11892802] (imputed)
CNVN
Mapped traitcotinine glucuronidation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006508
Study accessionGCST002652