SNP Detail For rs6951643
1.Mapping Information
Human SNP ID rs6951643
Human chromosome chr7
Human SNP position 126789463
Pig chromosome chr18
Pig SNP position 22745789
2.Annotation Information
PubMed ID25918841
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25918841
StudyA genome wide association study links glutamate receptor pathway to sporadic creutzfeldt-jakob disease risk.
Disease/TraitCreutzfeldt-Jakob disease (sporadic)
Initial sample434 European ancestry cases, 1,939 European ancestry controls
Replication sample1,109 European ancestry cases, 2,264 European ancestry controls
Region7q31.33
Chromosome idchr7
Chromosome position126789463
Reported geneGRM8
Mapped geneGRM8
Upstream gene id
Downstream gene id
SNP gene ids2918
Upstream gene distance
Downstream gene distance
SNP risk allelers6951643-A
SNPsrs6951643
Merged0
SNP id current6951643
Contextintron_variant
Intergenic0
Allele frequency0.519
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.27
%95 Ci[1.17-1.38]
PlatformAffymetrix [279389]
CNVN
Mapped traitsporadic Creutzfeld Jacob disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_1000656
Study accessionGCST002878