Human SNP ID | rs6951643 |
---|---|
Human chromosome | chr7 |
Human SNP position | 126789463 |
Pig chromosome | chr18 |
Pig SNP position | 22745789 |
PubMed ID | 25918841 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25918841 |
Study | A genome wide association study links glutamate receptor pathway to sporadic creutzfeldt-jakob disease risk. |
Disease/Trait | Creutzfeldt-Jakob disease (sporadic) |
Initial sample | 434 European ancestry cases, 1,939 European ancestry controls |
Replication sample | 1,109 European ancestry cases, 2,264 European ancestry controls |
Region | 7q31.33 |
Chromosome id | chr7 |
Chromosome position | 126789463 |
Reported gene | GRM8 |
Mapped gene | GRM8 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2918 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6951643-A |
SNPs | rs6951643 |
Merged | 0 |
SNP id current | 6951643 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.519 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.17-1.38] |
Platform | Affymetrix [279389] |
CNV | N |
Mapped trait | sporadic Creutzfeld Jacob disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000656 |
Study accession | GCST002878 |