SNP Detail For rs6941712
1.Mapping Information
Human SNP ID rs6941712
Human chromosome chr6
Human SNP position 130961070
Pig chromosome chr1
Pig SNP position 35911370
2.Annotation Information
PubMed ID22903471
JournalBrain Imaging Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/22903471
StudyGenome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
Disease/TraitLentiform nucleus volume
Initial sample162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families
Replication sampleNA
Region6q23.2
Chromosome idchr6
Chromosome position130961070
Reported geneEPB41L2
Mapped geneEPB41L2
Upstream gene id
Downstream gene id
SNP gene ids2037
Upstream gene distance
Downstream gene distance
SNP risk allelers6941712-C
SNPsrs6941712
Merged0
SNP id current6941712
Contextintron_variant
Intergenic0
Allele frequency0.13
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta149.67
%95 Ci[NR] unit decrease
PlatformIllumina [2380200] (imputed)
CNVN
Mapped traitlentiform nucleus measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004913
Study accessionGCST001640