SNP Detail For rs6939340
1.Mapping Information
Human SNP ID rs6939340
Human chromosome chr6
Human SNP position 22139775
Pig chromosome chr7
Pig SNP position 18303414
2.Annotation Information
PubMed ID18463370
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/18463370
StudyChromosome 6p22 locus associated with clinically aggressive neuroblastoma.
Disease/TraitNeuroblastoma
Initial sample1,032 European ancestry cases, 2,043 European ancestry controls
Replication sample720 European ancestry cases, 2,128 European ancestry controls
Region6p22.3
Chromosome idchr6
Chromosome position22139775
Reported geneFLJ22536, FLJ44180
Mapped geneCASC15, NBAT1
Upstream gene id
Downstream gene id
SNP gene ids401237, 729177
Upstream gene distance
Downstream gene distance
SNP risk allelers6939340-G
SNPsrs6939340
Merged0
SNP id current6939340
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000000000000009
Pvalue mlog14.0457574905606
P value text
Or beta1.37
%95 Ci[1.27-1.49]
PlatformIllumina [464934]
CNVN
Mapped traitneuroblastoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000621
Study accessionGCST000188