Human SNP ID | rs6939340 |
---|---|
Human chromosome | chr6 |
Human SNP position | 22139775 |
Pig chromosome | chr7 |
Pig SNP position | 18303414 |
PubMed ID | 18463370 |
---|---|
Journal | N Engl J Med |
Link | www.ncbi.nlm.nih.gov/pubmed/18463370 |
Study | Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. |
Disease/Trait | Neuroblastoma |
Initial sample | 1,032 European ancestry cases, 2,043 European ancestry controls |
Replication sample | 720 European ancestry cases, 2,128 European ancestry controls |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 22139775 |
Reported gene | FLJ22536, FLJ44180 |
Mapped gene | CASC15, NBAT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 401237, 729177 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6939340-G |
SNPs | rs6939340 |
Merged | 0 |
SNP id current | 6939340 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.5 |
P value | 0.000000000000009 |
Pvalue mlog | 14.0457574905606 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.27-1.49] |
Platform | Illumina [464934] |
CNV | N |
Mapped trait | neuroblastoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000621 |
Study accession | GCST000188 |