Human SNP ID | rs6938574 |
---|---|
Human chromosome | chr6 |
Human SNP position | 128069835 |
Pig chromosome | chr1 |
Pig SNP position | 38729876 |
PubMed ID | 25231870 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25231870 |
Study | Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. |
Disease/Trait | Menarche (age at onset) |
Initial sample | Up to 182,413 European ancestry females |
Replication sample | NA |
Region | 6q22.33 |
Chromosome id | chr6 |
Chromosome position | 128069835 |
Reported gene | PTPRK |
Mapped gene | LOC101928140, PTPRK |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928140, 5796 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6938574-T |
SNPs | rs6938574 |
Merged | 0 |
SNP id current | 6938574 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.04 |
%95 Ci | [0.026-0.054] unit increase |
Platform | Affymetrix, Illumina [2441815] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST002541 |