SNP Detail For rs6938574
1.Mapping Information
Human SNP ID rs6938574
Human chromosome chr6
Human SNP position 128069835
Pig chromosome chr1
Pig SNP position 38729876
2.Annotation Information
PubMed ID25231870
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25231870
StudyParent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
Disease/TraitMenarche (age at onset)
Initial sampleUp to 182,413 European ancestry females
Replication sampleNA
Region6q22.33
Chromosome idchr6
Chromosome position128069835
Reported genePTPRK
Mapped geneLOC101928140, PTPRK
Upstream gene id
Downstream gene id
SNP gene ids101928140, 5796
Upstream gene distance
Downstream gene distance
SNP risk allelers6938574-T
SNPsrs6938574
Merged0
SNP id current6938574
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.04
%95 Ci[0.026-0.054] unit increase
PlatformAffymetrix, Illumina [2441815] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST002541