SNP Detail For rs6932056
1.Mapping Information
Human SNP ID rs6932056
Human chromosome chr6
Human SNP position 137921300
Pig chromosome chr1
Pig SNP position 29801251
2.Annotation Information
PubMed ID26502338
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26502338
StudyGenetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.
Disease/TraitSystemic lupus erythematosus
Initial sample5,201 European ancestry cases, 9,066 European ancestry controls
Replication sample2,018 European ancestry cases, 6,925 European ancestry controls
Region6q23.3
Chromosome idchr6
Chromosome position137921300
Reported geneTNFAIP3
Mapped geneTNFAIP3 - LOC105378020
Upstream gene id7128
Downstream gene id105378020
SNP gene ids
Upstream gene distance37986
Downstream gene distance23742
SNP risk allelers6932056-C
SNPsrs6932056
Merged
SNP id current6932056
Contextintergenic_variant
Intergenic1
Allele frequency
P value2E-31
Pvalue mlog30.698970004336
P value text
Or beta1.83
%95 Ci[1.65鈥?.02]
PlatformIllumina [644674]
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003155