Human SNP ID | rs6932056 |
---|---|
Human chromosome | chr6 |
Human SNP position | 137921300 |
Pig chromosome | chr1 |
Pig SNP position | 29801251 |
PubMed ID | 26502338 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | 2,018 European ancestry cases, 6,925 European ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137921300 |
Reported gene | TNFAIP3 |
Mapped gene | TNFAIP3 - LOC105378020 |
Upstream gene id | 7128 |
Downstream gene id | 105378020 |
SNP gene ids | |
Upstream gene distance | 37986 |
Downstream gene distance | 23742 |
SNP risk allele | rs6932056-C |
SNPs | rs6932056 |
Merged | |
SNP id current | 6932056 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | |
P value | 2E-31 |
Pvalue mlog | 30.698970004336 |
P value text | |
Or beta | 1.83 |
%95 Ci | [1.65鈥?.02] |
Platform | Illumina [644674] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003155 |