Human SNP ID | rs6922617 |
---|---|
Human chromosome | chr6 |
Human SNP position | 41368363 |
Pig chromosome | chr7 |
Pig SNP position | 41862506 |
PubMed ID | 23562540 |
---|---|
Journal | Neuron |
Link | www.ncbi.nlm.nih.gov/pubmed/23562540 |
Study | GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer__s disease. |
Disease/Trait | Alzheimer__s disease biomarkers |
Initial sample | 591 European ancestry cases, 687 European ancestry controls |
Replication sample | |
Region | 6p21.1 |
Chromosome id | chr6 |
Chromosome position | 41368363 |
Reported gene | TREM, NCR2 |
Mapped gene | NCR2 - LOC100505711 |
Upstream gene id | 9436 |
Downstream gene id | 100505711 |
SNP gene ids | |
Upstream gene distance | 17476 |
Downstream gene distance | 13029 |
SNP risk allele | rs6922617-A |
SNPs | rs6922617 |
Merged | 0 |
SNP id current | 6922617 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (ptau) |
Or beta | 0.094 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [5815690] (imputed) |
CNV | N |
Mapped trait | p-tau measurement, Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004763, http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST001951 |