SNP Detail For rs6922617
1.Mapping Information
Human SNP ID rs6922617
Human chromosome chr6
Human SNP position 41368363
Pig chromosome chr7
Pig SNP position 41862506
2.Annotation Information
PubMed ID23562540
JournalNeuron
Linkwww.ncbi.nlm.nih.gov/pubmed/23562540
StudyGWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer__s disease.
Disease/TraitAlzheimer__s disease biomarkers
Initial sample591 European ancestry cases, 687 European ancestry controls
Replication sample
Region6p21.1
Chromosome idchr6
Chromosome position41368363
Reported geneTREM, NCR2
Mapped geneNCR2 - LOC100505711
Upstream gene id9436
Downstream gene id100505711
SNP gene ids
Upstream gene distance17476
Downstream gene distance13029
SNP risk allelers6922617-A
SNPsrs6922617
Merged0
SNP id current6922617
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text(ptau)
Or beta0.094
%95 Ci[NR] unit decrease
PlatformIllumina [5815690] (imputed)
CNVN
Mapped traitp-tau measurement, Alzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004763, http://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST001951