SNP Detail For rs6909279
1.Mapping Information
Human SNP ID rs6909279
Human chromosome chr6
Human SNP position 151574321
Pig chromosome chr1
Pig SNP position 17104123
2.Annotation Information
PubMed ID23437003
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23437003
StudyGenetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.
Disease/TraitBone mineral density
Initial sampleup to 5,878 European ancestry individuals
Replication sampleup to 1,052 European ancestry individuals
Region6q25.1
Chromosome idchr6
Chromosome position151574321
Reported geneESR1, C6orf97
Mapped geneCCDC170
Upstream gene id
Downstream gene id
SNP gene ids80129
Upstream gene distance
Downstream gene distance
SNP risk allelers6909279-G
SNPsrs6909279
Merged0
SNP id current6909279
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000000001
Pvalue mlog9
P value text(Cortical vBMD)
Or beta0.09
%95 Ci[0.070-0.110] unit decrease
PlatformIllumina [2401124] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001870