Human SNP ID | rs6909279 |
---|---|
Human chromosome | chr6 |
Human SNP position | 151574321 |
Pig chromosome | chr1 |
Pig SNP position | 17104123 |
PubMed ID | 23437003 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23437003 |
Study | Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure. |
Disease/Trait | Bone mineral density |
Initial sample | up to 5,878 European ancestry individuals |
Replication sample | up to 1,052 European ancestry individuals |
Region | 6q25.1 |
Chromosome id | chr6 |
Chromosome position | 151574321 |
Reported gene | ESR1, C6orf97 |
Mapped gene | CCDC170 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6909279-G |
SNPs | rs6909279 |
Merged | 0 |
SNP id current | 6909279 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (Cortical vBMD) |
Or beta | 0.09 |
%95 Ci | [0.070-0.110] unit decrease |
Platform | Illumina [2401124] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001870 |