SNP Detail For rs690705
1.Mapping Information
Human SNP ID rs690705
Human chromosome chr13
Human SNP position 34080781
Pig chromosome chr11
Pig SNP position 10304816
2.Annotation Information
PubMed ID20061627
JournalJ Alzheimers Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/20061627
StudyGenome-wide scan of copy number variation in late-onset Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample331 European ancestry cases, 368 European ancestry controls
Replication sampleNA
Region13q13.2
Chromosome idchr13
Chromosome position34080781
Reported geneRFC3
Mapped geneLOC105370156 - LOC105370158
Upstream gene id105370156
Downstream gene id105370158
SNP gene ids
Upstream gene distance80124
Downstream gene distance267162
SNP risk allelers690705-?
SNPsrs690705
Merged0
SNP id current690705
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.25
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [~ 550000]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000484