Human SNP ID | rs6906021 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32658534 |
Pig chromosome | chr7 |
Pig SNP position | 29179710 |
PubMed ID | 23817571 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23817571 |
Study | Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization. |
Disease/Trait | Allergic sensitization |
Initial sample | 5,789 European ancestry cases, 10,056 European ancestry controls |
Replication sample | 6,114 European ancestry cases, 9,920 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32658534 |
Reported gene | HLA-DQB1, HLA-DQA1 |
Mapped gene | HLA-DQA1 - HLA-DQB1 |
Upstream gene id | 3117 |
Downstream gene id | 3119 |
SNP gene ids | |
Upstream gene distance | 3760 |
Downstream gene distance | 930 |
SNP risk allele | rs6906021-C |
SNPs | rs6906021 |
Merged | 0 |
SNP id current | 6906021 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.11-1.2] |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | allergic sensitization measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005298 |
Study accession | GCST002084 |
PubMed ID | 23817569 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23817569 |
Study | A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci. |
Disease/Trait | Self-reported allergy |
Initial sample | 53,862 European ancestry individuals |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32658534 |
Reported gene | HLA-DQB1, HLA-DQA1 |
Mapped gene | HLA-DQA1 - HLA-DQB1 |
Upstream gene id | 3117 |
Downstream gene id | 3119 |
SNP gene ids | |
Upstream gene distance | 3760 |
Downstream gene distance | 930 |
SNP risk allele | rs6906021-C |
SNPs | rs6906021 |
Merged | 0 |
SNP id current | 6906021 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.4749 |
P value | 0.000000000000007 |
Pvalue mlog | 14.1549019599857 |
P value text | |
Or beta | 0.0945 |
%95 Ci | [0.071-0.118] unit increase |
Platform | Illumina [2400000] (imputed) |
CNV | N |
Mapped trait | allergy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003785 |
Study accession | GCST002083 |