SNP Detail For rs6901152
1.Mapping Information
Human SNP ID rs6901152
Human chromosome chr6
Human SNP position 143337875
Pig chromosome chr1
Pig SNP position 24302822
2.Annotation Information
PubMed ID22076464
JournalLeukemia
Linkwww.ncbi.nlm.nih.gov/pubmed/22076464
StudyIdentification of germline susceptibility loci in ETV6-RUNX1-rearranged childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample419 European ancestry ETV6-RUNX1 positive cases, 474 European ancestry controls
Replication sample951 European ancestry ETV6-RUNX1 positive cases, 326 European ancestry ETV6-RUNX1 negative cases, 3,061 European ancestry controls
Region6q24.2
Chromosome idchr6
Chromosome position143337875
Reported geneAIG1
Mapped geneAIG1
Upstream gene id
Downstream gene id
SNP gene ids51390
Upstream gene distance
Downstream gene distance
SNP risk allelers6901152-T
SNPsrs6901152
Merged0
SNP id current6901152
Contextintron_variant
Intergenic0
Allele frequency0.43
P value0.000005
Pvalue mlog5.30102999566398
P value text(ETV6-RUNX1 positive, Northern European)
Or beta
%95 Ci
PlatformAffymetrix [355750]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST001320