Human SNP ID | rs6896969 |
---|---|
Human chromosome | chr5 |
Human SNP position | 40424324 |
Pig chromosome | chr16 |
Pig SNP position | 26728324 |
PubMed ID | 19525953 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19525953 |
Study | Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. |
Disease/Trait | Multiple sclerosis |
Initial sample | 2,624 European ancestry cases, 7,220 European ancestry controls |
Replication sample | 2,215 European ancestry cases, 2,116 European ancestry controls |
Region | 5p13.1 |
Chromosome id | chr5 |
Chromosome position | 40424324 |
Reported gene | PTGER4 |
Mapped gene | LOC105374736 - LOC105374737 |
Upstream gene id | 105374736 |
Downstream gene id | 105374737 |
SNP gene ids | |
Upstream gene distance | 77769 |
Downstream gene distance | 175556 |
SNP risk allele | rs6896969-C |
SNPs | rs6896969 |
Merged | 0 |
SNP id current | 6896969 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | 1.1 |
%95 Ci | [1.01-1.20] |
Platform | Affymetrix, Illumina [~ 2560000] (imputed) |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST000424 |