SNP Detail For rs6896969
1.Mapping Information
Human SNP ID rs6896969
Human chromosome chr5
Human SNP position 40424324
Pig chromosome chr16
Pig SNP position 26728324
2.Annotation Information
PubMed ID19525953
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19525953
StudyMeta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.
Disease/TraitMultiple sclerosis
Initial sample2,624 European ancestry cases, 7,220 European ancestry controls
Replication sample2,215 European ancestry cases, 2,116 European ancestry controls
Region5p13.1
Chromosome idchr5
Chromosome position40424324
Reported genePTGER4
Mapped geneLOC105374736 - LOC105374737
Upstream gene id105374736
Downstream gene id105374737
SNP gene ids
Upstream gene distance77769
Downstream gene distance175556
SNP risk allelers6896969-C
SNPsrs6896969
Merged0
SNP id current6896969
Contextintron_variant
Intergenic1
Allele frequency0.62
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta1.1
%95 Ci[1.01-1.20]
PlatformAffymetrix, Illumina [~ 2560000] (imputed)
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST000424