Human SNP ID | rs6894139 |
---|---|
Human chromosome | chr5 |
Human SNP position | 89031965 |
Pig chromosome | chr2 |
Pig SNP position | 99073049 |
PubMed ID | 24249740 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24249740 |
Study | Multistage genome-wide association meta-analyses identified two new loci for bone mineral density. |
Disease/Trait | Bone mineral density |
Initial sample | 5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females |
Replication sample | 7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 89031965 |
Reported gene | MEF2C |
Mapped gene | MEF2C-AS1, LOC105379072 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101929423, 105379072 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6894139-? |
SNPs | rs6894139 |
Merged | 0 |
SNP id current | 6894139 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000000007 |
Pvalue mlog | 17.1549019599857 |
P value text | (FNK) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [5842825] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST002276 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 89031965 |
Reported gene | MEF2C |
Mapped gene | MEF2C-AS1, LOC105379072 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101929423, 105379072 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6894139-T |
SNPs | rs6894139 |
Merged | 0 |
SNP id current | 6894139 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.562 |
P value | 6E-24 |
Pvalue mlog | 23.2218487496163 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.024-0.036] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |