SNP Detail For rs6892230
1.Mapping Information
Human SNP ID rs6892230
Human chromosome chr5
Human SNP position 65843936
Pig chromosome chr16
Pig SNP position 47699335
2.Annotation Information
PubMed ID25367360
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25367360
StudyGenome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.
Disease/TraitRefractive astigmatism
Initial sample8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged
Replication sampleNA
Region5q12.3
Chromosome idchr5
Chromosome position65843936
Reported geneNLN
Mapped geneNLN - ERBB2IP
Upstream gene id57486
Downstream gene id55914
SNP gene ids
Upstream gene distance14653
Downstream gene distance82529
SNP risk allelers6892230-A
SNPsrs6892230
Merged0
SNP id current6892230
Contextintron_variant
Intergenic1
Allele frequency0.016
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.236
%95 Ci[1.133-1.349]
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitAstigmatism
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0000483
Study accessionGCST002685