Human SNP ID | rs6892230 |
---|---|
Human chromosome | chr5 |
Human SNP position | 65843936 |
Pig chromosome | chr16 |
Pig SNP position | 47699335 |
PubMed ID | 25367360 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25367360 |
Study | Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium. |
Disease/Trait | Refractive astigmatism |
Initial sample | 8,487 European ancestry cases aged 25 years or older, 23,481 European ancestry controls aged 25 years or older, 907 European ancestry cases aged less than 25 years, 4,733 European ancestry controls aged less than 25 years, 3,076 Asian ancestry cases aged |
Replication sample | NA |
Region | 5q12.3 |
Chromosome id | chr5 |
Chromosome position | 65843936 |
Reported gene | NLN |
Mapped gene | NLN - ERBB2IP |
Upstream gene id | 57486 |
Downstream gene id | 55914 |
SNP gene ids | |
Upstream gene distance | 14653 |
Downstream gene distance | 82529 |
SNP risk allele | rs6892230-A |
SNPs | rs6892230 |
Merged | 0 |
SNP id current | 6892230 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.016 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.236 |
%95 Ci | [1.133-1.349] |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | Astigmatism |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0000483 |
Study accession | GCST002685 |