SNP Detail For rs6889746
1.Mapping Information
Human SNP ID rs6889746
Human chromosome chr5
Human SNP position 52411072
Pig chromosome chr16
Pig SNP position 33636960
2.Annotation Information
PubMed ID23509613
JournalAutoimmune Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23509613
StudyGenome-wide association study of antiphospholipid antibodies.
Disease/TraitPresence of antiphospholipid antibodies
Initial sample183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position52411072
Reported genePELO
Mapped geneLOC105378962 - LOC105378963
Upstream gene id105378962
Downstream gene id105378963
SNP gene ids
Upstream gene distance71838
Downstream gene distance263617
SNP risk allelers6889746-?
SNPsrs6889746
Merged0
SNP id current6889746
Contextintergenic_variant
Intergenic1
Allele frequency0.3534
P value0.000006
Pvalue mlog5.22184874961635
P value text(ACL)
Or beta1.776
%95 Ci[NR]
PlatformAffymetrix [906600]
CNVN
Mapped traitantiphospholipid antibody measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005200
Study accessionGCST001872