Human SNP ID | rs6889746 |
---|---|
Human chromosome | chr5 |
Human SNP position | 52411072 |
Pig chromosome | chr16 |
Pig SNP position | 33636960 |
PubMed ID | 23509613 |
---|---|
Journal | Autoimmune Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23509613 |
Study | Genome-wide association study of antiphospholipid antibodies. |
Disease/Trait | Presence of antiphospholipid antibodies |
Initial sample | 183 European ancestry ACL-positive cases, 487 European ancestry ACL-negative controls, 127 European ancestry LAC-positive cases, 581 European ancestry LAC-negative controls, 136 European ancestry Anti-B2GPI-positive cases, 360 European ancestry Anti-B2GPI |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 52411072 |
Reported gene | PELO |
Mapped gene | LOC105378962 - LOC105378963 |
Upstream gene id | 105378962 |
Downstream gene id | 105378963 |
SNP gene ids | |
Upstream gene distance | 71838 |
Downstream gene distance | 263617 |
SNP risk allele | rs6889746-? |
SNPs | rs6889746 |
Merged | 0 |
SNP id current | 6889746 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.3534 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (ACL) |
Or beta | 1.776 |
%95 Ci | [NR] |
Platform | Affymetrix [906600] |
CNV | N |
Mapped trait | antiphospholipid antibody measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005200 |
Study accession | GCST001872 |