Human SNP ID | rs6869841 |
---|---|
Human chromosome | chr5 |
Human SNP position | 173512423 |
Pig chromosome | chr16 |
Pig SNP position | 55152283 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 5q35.2 |
Chromosome id | chr5 |
Chromosome position | 173512423 |
Reported gene | BOD1, FAM44B, LOC285593, STC2 |
Mapped gene | LOC105377732 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377732 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs6869841-A |
SNPs | rs6869841 |
Merged | 0 |
SNP id current | 6869841 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.21 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.04-1.11] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |