SNP Detail For rs6869841
1.Mapping Information
Human SNP ID rs6869841
Human chromosome chr5
Human SNP position 173512423
Pig chromosome chr16
Pig SNP position 55152283
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region5q35.2
Chromosome idchr5
Chromosome position173512423
Reported geneBOD1, FAM44B, LOC285593, STC2
Mapped geneLOC105377732
Upstream gene id
Downstream gene id
SNP gene ids105377732
Upstream gene distance
Downstream gene distance
SNP risk allelers6869841-A
SNPsrs6869841
Merged0
SNP id current6869841
Contextintergenic_variant
Intergenic0
Allele frequency0.21
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta1.07
%95 Ci[1.04-1.11]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942